imagej apply threshold to only selected area

Those projects are outside the scope of what I can achieve at LOCI right now, but I’m very supportive and enthusiastic if another group wants to get involved in those directions. A small idiosyncrasy to be aware of is that, as far as ImageJ is concerned, there is only ever one 'official' results table the one with the title Results.Different, similar-looking tables can be produced (perhaps by duplicating the official table, or internally by some other command), but any new measurements you make with the Measure command will only be added to the official table. Maybe that is someone rescuing and continuing the ImageJFX project maybe that is another entirely new UI or maybe just integrating ImageJ features with other existing UIs. In other words, a threshold is set at the maximum value minus noise tolerance and the contiguous area around the maximum above the threshold is analyzed. My feeling is that the thresholding UI should be improved as part of a larger UI overhaul. ImageJ provides several built-in methods for automatically computing a global threshold. Hold the Alt key down while adjusting the minimum to move a fixed-width thresholding window across the range of gray values (similar to Level, above). There are lots of other bigger fish to fry right now. Interactive thresholding with ImageJ/Fiji import a collection of images enhance image quality/contrast threshold all images individually allow user to dis-/. Global thresholding works by choosing a value cutoff, such that every pixel less than that value is considered one class, while every pixel greater than that value is considered the other class. It’s a tall order, and likely means that the way thresholding works in ImageJ won’t change any time soon. Auto feature will make these choices based only on the selected area. Use the wand tool or polygon tool to measure the area of a spot. I agree with that a good way to think about such changes is: what impact will it have on the way people work? Will it encourage good workflows, or bad workflows, and how + why? I also agree that existing functionality should be left in place-at minimum, existing macros must still work the way they did before. If you have a selection within your image, the. Adjust levels and limit the threshold of the image to select for specific darkness levels. Speaking from experience: any change we make to very common core functionality in ImageJ will be met with complaints. Seems like we have to agree to disagree here

Imagej apply threshold to only selected area